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1

Survey of Foodborne Pathogens, Aerobic Plate Counts, Total Coliform Counts, and Escherichia coli Counts in Leafy Greens, Sprouts, and Melons Marketed in the United States

Zhang, Guodong, Chen, Yi, Hu, Lijun, Melka, David, Wang, Hua, Laasri, Anna, Brown, Eric W., Strain, Errol, Allard, Marc, Bunning, Vincent K., Parish, Mickey, Musser, Steven M., Hammack, Thomas S.

Journal:

Journal of Food Protection

Year:

2018

Language:

english

File:

PDF, 431 KB

english, 2018

2

Prevalence of Salmonella in Cashews, Hazelnuts, Macadamia Nuts, Pecans, Pine Nuts, and Walnuts in the United States

Zhang, Guodong, Hu, Lijun, Melka, David, Wang, Hua, Laasri, Anna, Brown, Eric W., Strain, Errol, Allard, Marc, Bunning, Vincent K., Musser, Steven M., Johnson, Rhoma, Farakos, Sofia M. Santillana, Sco

Journal:

Journal of Food Protection

Year:

2017

Language:

english

File:

PDF, 498 KB

english, 2017

3

Survival of Salmonella Typhi and Shigella dysenteriae in Dehydrated Infant Formula

James B. Day, Devang Sharma, Nusrat Siddique, Yun-Yun D. Hao, Errol A. Strain, Robert J. Blodgett, Sufian F. Al-Khaldi

Journal:

Journal of Food Science

Year:

2011

Language:

english

File:

PDF, 146 KB

english, 2011

4

Draft Genome Sequence of Salmonella enterica subsp. enterica Serovar Give, Isolated from an Imported Chili Powder Product

Wang, Hua, Chen, Yi, Ayers, Sherry, Melka, David, Laasri, Anna, Payne, Justin S., Zheng, Jie, Son, Insook, Timme, Ruth, Kastanis, George, Hammack, Thomas S., Strain, Errol, Allard, Marc W., Evans, Pet

Journal:

Genome Announcements

Year:

2015

Language:

english

File:

PDF, 156 KB

english, 2015

5

Singleton Sequence Type 382, an Emerging Clonal Group of Listeria monocytogenes Associated with Three Multistate Outbreaks Linked to Contaminated Stone Fruit, Caramel Apples, and Leafy Green Salad

Chen, Yi, Luo, Yan, Pettengill, James, Timme, Ruth, Melka, David, Doyle, Matthew, Jackson, Alikeh, Parish, Mickey, Hammack, Thomas S., Allard, Marc W., Brown, Eric W., Strain, Errol A., Diekema, Danie

Journal:

Journal of Clinical Microbiology

Year:

2017

Language:

english

File:

PDF, 1.78 MB

english, 2017

6

Co-Enriching Microflora Associated with Culture Based Methods to Detect Salmonella from Tomato Phyllosphere

Ottesen, Andrea R., Gonzalez, Antonio, Bell, Rebecca, Arce, Caroline, Rideout, Steven, Allard, Marc, Evans, Peter, Strain, Errol, Musser, Steven, Knight, Rob, Brown, Eric, Pettengill, James B., Chang,

Journal:

Year:

2013

Language:

english

File:

PDF, 1.18 MB

english, 2013

7

Infectious Dose of Listeria monocytogenes in Outbreak Linked to Ice Cream, United States, 2015

Pouillot, Régis, Klontz, Karl C., Chen, Yi, Burall, Laurel S., Macarisin, Dumitru, Doyle, Matthew, Bally, Kären M., Strain, Errol, Datta, Atin R., Hammack, Thomas S., Van Doren, Jane M.

Journal:

Emerging Infectious Diseases

Year:

2016

Language:

english

File:

PDF, 546 KB

english, 2016

8

Metagenome tracking biogeographic agroecology: Phytobiota of tomatoes from Virginia, Maryland, California, and North Carolina

Ottesen, Andrea, Ramachandran, Padmini, Reed, Elizabeth, Gu, Ganyu, Gorham, Sasha, Ducharme, Diane, Newell, Michael, Rideout, Steven, Turini, Thomas, Hill, Thomas, Strain, Errol, Brown, Eric

Journal:

Food Microbiology

Year:

2018

Language:

english

File:

PDF, 1.31 MB

english, 2018

9

Whole genome sequencing uses for foodborne contamination and compliance: Discovery of an emerging contamination event in an ice cream facility using whole genome sequencing

Allard, Marc W., Strain, Errol, Rand, Hugh, Melka, David, Correll, William A., Hintz, Leslie, Stevens, Eric, Timme, Ruth, Lomonaco, Sara, Chen, Yi, Musser, Steven M., Brown, Eric W.

Journal:

Infection, Genetics and Evolution

Year:

2019

Language:

english

File:

PDF, 1.86 MB

english, 2019

10

Optimizing open data to support one health: best practices to ensure interoperability of genomic data from bacterial pathogens

Timme, Ruth E., Wolfgang, William J., Balkey, Maria, Venkata, Sai Laxmi Gubbala, Randolph, Robyn, Allard, Marc, Strain, Errol

Journal:

One Health Outlook

Year:

2020

File:

PDF, 1.78 MB

2020

11

Phylogenetic and Biogeographic Patterns of Vibrio parahaemolyticus from North America Inferred from Whole Genome Sequence Data

Miller, John J., Weimer, Bart C., Timme, Ruth, LÃ¼deke, Catharina H. M., Pettengill, James B., Bandoy, DJ Darwin, Weis, Allison M., Kaufman, James, Huang, B. Carol, Payne, Justin, Strain, Errol, Jones

Journal:

Applied and Environmental Microbiology

Year:

2020

File:

PDF, 2.78 MB

2020

12

Positively Selected Sites in theArabidopsisReceptor-Like Kinase Gene Family

Errol Strain, Spencer V. Muse

Journal:

Journal of Molecular Evolution

Year:

2005

Language:

english

File:

PDF, 207 KB

english, 2005

13

flowCore: a Bioconductor package for high throughput flow cytometry

Florian Hahne, Nolwenn LeMeur, Ryan R Brinkman, Byron Ellis, Perry Haaland, Deepayan Sarkar, Josef Spidlen, Errol Strain, Robert Gentleman

Journal:

BMC Bioinformatics

Year:

2009

Language:

english

File:

PDF, 2.57 MB

english, 2009

14

High resolution clustering ofSalmonella entericaserovar Montevideo strains using a next-generation sequencing approach

Allard, Marc W, Luo, Yan, Strain, Errol, Li, Cong, Keys, Christine E, Son, Insook, Stones, Robert, Musser, Steven M, Brown, Eric W

Journal:

Year:

2012

Language:

english

File:

PDF, 557 KB

english, 2012

15

Comparison of six commercial DNA extraction kits for detection of Brucella neotomae in Mexican and Central American-style cheese and other milk products

Lusk, Tina S., Strain, Errol, Kase, Julie A.

Journal:

Food Microbiology

Year:

2013

Language:

english

File:

PDF, 204 KB

english, 2013

16

Construction of Listeria monocytogenes Mutants with In-Frame Deletions in the Phosphotransferase Transport System (PTS) and Analysis of Their Growth under Stress Conditions

Liu, Yanhong, Ceruso, Marina, Jiang, Yuji, Datta, Atin R., Carter, Laurenda, Strain, Errol, Pepe, Tiziana, Anastasi, Aniello, Fratamico, Pina

Journal:

Journal of Food Science

Year:

2013

Language:

english

File:

PDF, 298 KB

english, 2013

17

Genetic Diversity of Salmonella Pathogenicity Islands SPI-5 and SPI-6 in Salmonella Newport

Cao, Guojie, Allard, Marc, Strain, Errol, Stones, Robert, Zhao, Shaohua, Brown, Eric, Meng, Jianghong

Journal:

Foodborne Pathogens & Disease

Year:

2014

Language:

english

File:

PDF, 438 KB

english, 2014

18

Identification of a Salmonellosis Outbreak by Means of Molecular Sequencing

Lienau, E. Kurt, Strain, Errol, Wang, Charles, Zheng, Jie, Ottesen, Andrea R., Keys, Christine E., Hammack, Thomas S., Musser, Steven M., Brown, Eric W., Allard, Marc W., Cao, Guojie, Meng, Jianghong,

Journal:

Boston Medical and Surgical Journal

Year:

2011

Language:

english

File:

PDF, 471 KB

english, 2011

19

Bariatric surgery in cancer survivorship: does a history of cancer affect weight loss outcomes?

Philip, Errol J., Torghabeh, Mehyar H., Strain, Gladys W.

Journal:

Surgery for Obesity and Related Diseases

Year:

2015

Language:

english

File:

PDF, 234 KB

english, 2015

20

Proficiency testing for bacterial whole genome sequencing: an end-user survey of current capabilities, requirements and priorities

Moran-Gilad, Jacob, Sintchenko, Vitali, Pedersen, Susanne Karlsmose, Wolfgang, William J, Pettengill, James, Strain, Errol, Hendriksen, Rene S

Journal:

BMC Infectious Diseases

Year:

2015

Language:

english

File:

PDF, 1.08 MB

english, 2015

21

Efficient Isolation and Identification of Bacillus cereus Group

Tallent, Sandra M., Kotewicz, Kristin M., Strain, Errol A., Bennett, Reginald W.

Journal:

Journal of AOAC International

Year:

2012

Language:

english

File:

PDF, 301 KB

english, 2012

22

Rapid Whole-Genome Sequencing for Surveillance of Salmonella enterica Serovar Enteritidis

den Bakker, Henk C., Allard, Marc W., Bopp, Dianna, Brown, Eric W., Fontana, John, Iqbal, Zamin, Kinney, Aristea, Limberger, Ronald, Musser, Kimberlee A., Shudt, Matthew, Strain, Errol, Wiedmann, Mart

Journal:

Emerging Infectious Diseases

Year:

2014

Language:

english

File:

PDF, 692 KB

english, 2014

23

Implementation of Nationwide Real-Time Whole-Genome Sequencing to Enhance Listeriosis Outbreak Detection and Investigation

Jackson, Brendan R., Tarr, Cheryl, Strain, Errol, Jackson, Kelly A., Conrad, Amanda, Carleton, Heather, Katz, Lee S., Stroika, Steven, Gould, L. Hannah, Mody, Rajal K., Silk, Benjamin J., Beal, Jennif

Journal:

Clinical Infectious Diseases

Year:

2016

Language:

english

File:

PDF, 1.05 MB

english, 2016

24

Sharing is caring: international sharing of data enhances genomic surveillance of Listeria monocytogenes

Kwong, Jason C., Stafford, Russell, Strain, Errol, Stinear, Timothy P., Seemann, Torsten, Howden, Benjamin P.

Journal:

Clinical Infectious Diseases

Year:

2016

Language:

english

File:

PDF, 676 KB

english, 2016

25

the PRACTICAL value of Food Pathogen Traceability through BUILDING a Whole-Genome Sequencing Network and database

Allard, Marc W., Strain, Errol, Melka, David, Bunning, Kelly, Musser, Steven M., Brown, Eric W., Timme, Ruth

Journal:

Journal of Clinical Microbiology

Year:

2016

Language:

english

File:

PDF, 983 KB

english, 2016

26

Core genome multilocus sequence typing for the identification of globally distributed clonal groups and differentiation of outbreak strains of Listeria monocytogenes

Chen, Yi, Gonzalez-Escalona, Narjol, Hammack, Thomas S., Allard, Marc, Strain, Errol A., Brown, Eric W.

Journal:

Applied and Environmental Microbiology

Year:

2016

Language:

english

File:

PDF, 1.57 MB

english, 2016

27

Genome Sequence of the Listeria monocytogenes Food Isolate HPB913, Collected in Canada in 1993

Pightling, Arthur W., Rand, Hugh, Strain, Errol, Pagotto, Franco

Journal:

Genome Announcements

Year:

2016

Language:

english

File:

PDF, 142 KB

english, 2016

28

Genome Sequences of Multidrug-Resistant, Colistin-Susceptible and -Resistant Klebsiella pneumoniae Clinical Isolates from Pakistan

Crawford, Matthew A., Timme, Ruth, Lomonaco, Sara, Lascols, Christine, Fisher, Debra J., Sharma, Shashi K., Strain, Errol, Allard, Marc W., Brown, Eric W., McFarland, Melinda A., Croley, Tim, Hammack,

Journal:

Genome Announcements

Year:

2016

Language:

english

File:

PDF, 140 KB

english, 2016

29

Enumeration and characterization of Listeria monocytogenes in novelty ice cream samples manufactured on a specific production line linked to a listeriosis outbreak

Burall, Laurel S., Chen, Yi, Macarisin, Dumitru, Pouillot, Regis, Strain, Errol, De Jesus, Antonio J., Laasri, Anna, Wang, Hua, Ali, Laila, Tatavarthy, Aparna, Zhang, Guodong, Hu, Lijun, Day, James, K

Journal:

Year:

2017

Language:

english

File:

PDF, 814 KB

english, 2017

30

Genome Sequence of Listeria monocytogenes Strain HPB2088 (Serotype 1/2a), an Environmental Isolate Collected in Canada in 1994

Pightling, Arthur W., Rand, Hugh, Strain, Errol, Pagotto, Franco

Journal:

Genome Announcements

Year:

2016

Language:

english

File:

PDF, 137 KB

english, 2016

31

On the Evolutionary History, Population Genetics and Diversity among Isolates of Salmonella Enteritidis PFGE Pattern JEGX01.0004

Allard, Marc W., Luo, Yan, Strain, Errol, Pettengill, James, Timme, Ruth, Wang, Charles, Li, Cong, Keys, Christine E., Zheng, Jie, Stones, Robert, Wilson, Mark R., Musser, Steven M., Brown, Eric W., C

Journal:

Year:

2013

Language:

english

File:

PDF, 794 KB

english, 2013

32

Genome-Wide Methylation Patterns in Salmonella enterica Subsp. enterica Serovars

Pirone-Davies, Cary, Hoffmann, Maria, Roberts, Richard J., Muruvanda, Tim, Timme, Ruth E., Strain, Errol, Luo, Yan, Payne, Justin, Luong, Khai, Song, Yi, Tsai, Yu-Chih, Boitano, Matthew, Clark, Tyson

Journal:

Year:

2015

Language:

english

File:

PDF, 630 KB

english, 2015

33

Real-Time Pathogen Detection in the Era of Whole-Genome Sequencing and Big Data: Comparison of k-mer and Site-Based Methods for Inferring the Genetic Distances among Tens of Thousands of Salmonella Samples

Pettengill, James B., Pightling, Arthur W., Baugher, Joseph D., Rand, Hugh, Strain, Errol, Tang, Haixu

Journal:

Year:

2016

Language:

english

File:

PDF, 1.95 MB

english, 2016

34

Ecological prevalence, genetic diversity, and epidemiological aspects of Salmonella isolated from tomato agricultural regions of the Virginia Eastern Shore

Bell, Rebecca L., Zheng, Jie, Burrows, Erik, Allard, Sarah, Wang, Charles Y., Keys, Christine E., Melka, David C., Strain, Errol, Luo, Yan, Allard, Marc W., Rideout, Steven, Brown, Eric W.

Journal:

Frontiers in Microbiology

Year:

2015

Language:

english

File:

PDF, 1.78 MB

english, 2015

35

The Public Health Impact of a Publically Available, Environmental Database of Microbial Genomes

Stevens, Eric L., Timme, Ruth, Brown, Eric W., Allard, Marc W., Strain, Errol, Bunning, Kelly, Musser, Steven

Journal:

Frontiers in Microbiology

Year:

2017

Language:

english

File:

PDF, 387 KB

english, 2017

36

Interpreting Whole-Genome Sequence Analyses of Foodborne Bacteria for Regulatory Applications and Outbreak Investigations

Pightling, Arthur W., Pettengill, James B., Luo, Yan, Baugher, Joseph D., Rand, Hugh, Strain, Errol

Journal:

Frontiers in Microbiology

Year:

2018

Language:

english

File:

PDF, 5.25 MB

english, 2018

37

Prevalence and Level of Listeria monocytogenes in Ice Cream Linked to a Listeriosis Outbreak in the United States

CHEN, YI, BURALL, LAUREL S., MACARISIN, DUMITRU, POUILLOT, RÉGIS, STRAIN, ERROL, DE JESUS, ANTONIO J., LAASRI, ANNA, WANG, HUA, ALI, LAILA, TATAVARTHY, APARNA, ZHANG, GUODONG, HU, LIJUN, DAY, JAMES, K

Journal:

Journal of Food Protection

Year:

2016

Language:

english

File:

PDF, 117 KB

english, 2016

38

Prevalence of Salmonella in 11 Spices Offered for Sale from Retail Establishments and in Imported Shipments Offered for Entry to the United States

Zhang, Guodong, Hu, Lijun, Pouillot, Régis, Tatavarthy, Aparna, Doren, Jane M. Van, Kleinmeier, Daria, Ziobro, George C., Melka, David, Wang, Hua, Brown, Eric W., Strain, Errol, Bunning, Vincent K., M

Journal:

Journal of Food Protection

Year:

2017

Language:

english

File:

PDF, 374 KB

english, 2017

39

Characterization of the Microbiota of Oyster Larvae ( Crassostrea virginica ) and Tank Water from an Aquaculture System with High and Low Larval Survival Rates

Ramachandran, Padmini, Reed, Elizabeth, Commichaux, Seth, Strain, Errol, Depaola, Angelo, Rikard, Scott, Ottesen, Andrea

Journal:

Genome Announcements

Year:

2018

Language:

english

File:

PDF, 111 KB

english, 2018

40

Analysis of High-Throughput Flow Cytometry Data Using plateCore

Strain, Errol, Hahne, Florian, Brinkman, Ryan R., Haaland, Perry

Journal:

Advances in Bioinformatics

Year:

2009

Language:

english

File:

PDF, 1.80 MB

english, 2009

41

Within-species contamination of bacterial whole-genome sequence data has a greater influence on clustering analyses than between-species contamination

Pightling, Arthur W., Pettengill, James B., Wang, Yu, Rand, Hugh, Strain, Errol

Journal:

Year:

2019

File:

PDF, 1.42 MB

2019

42

The Northeast United States has Greater Prevalence and Antibiotic Resistance among Salmonella from Retail Meat

Nyirabahizi, Epiphanie, Tyson, Gregory H, Tate, Heather, Kabera, Claudine, Crarey, Emily, Ayers, Sherry, Strain, Errol

Journal:

Journal of Food Protection

Year:

2020

File:

PDF, 2.27 MB

2020

43

Quasimetagenomic source tracking of Listeria monocytogenes from naturally contaminated ice cream

Ottesen, Andrea, Ramachandran, Padmini, Chen, Yi, Brown, Eric, Reed, Elizabeth, Strain, Errol

Journal:

BMC Infectious Diseases

Year:

2020

Language:

english

File:

PDF, 1012 KB

english, 2020

44

Evaluation of Escherichia coli as an indicator for antimicrobial resistance in Salmonella recovered from the same food or animal ceca samples

Nyirabahizi, Epiphanie, Tyson, Gregory H., Dessai, Uday, Zhao, Shaohua, Kabera, Claudine, Crarey, Emily, Womack, Niketta, Crews, Mary Katherine, Strain, Errol, Tate, Heather

Journal:

Year:

2020

File:

PDF, 1.83 MB

2020

45

Core Genome Multilocus Sequence Typing for Food Animal Source Attribution of Human Campylobacter jejuni Infections

Hsu, Chih-Hao, Harrison, Lucas, Mukherjee, Sampa, Strain, Errol, McDermott, Patrick, Zhang, Qijing, Zhao, Shaohua

Journal:

Year:

2020

File:

PDF, 767 KB

2020

46

Using full chloroplast genomes of âredâ and âyellowâ Bixa orellana (achiote) for kmer based identification and phylogenetic inference

VillacrÃ©s-Vallejo, Jorge, Aranda-Ventura, JosÃ©, Wallis, Anna, Cagle, Robin, Handy, Sara M., Davis, Jeffery, Reed, Elizabeth, Zhang, Shu, Strain, Errol, Pava-Ripoll, Monica, Erickson, David, Ramachan

Journal:

Year:

2020

File:

PDF, 1.93 MB

2020

47

Comparative Genomic Analysis of 450 Strains of Salmonella enterica Isolated from Diseased Animals

Zhao, Shaohua, Li, Cong, Hsu, Chih-Hao, Tyson, Gregory H., Strain, Errol, Tate, Heather, Tran, Thu-Thuy, Abbott, Jason, McDermott, Patrick F.

Journal:

Year:

2020

File:

PDF, 1.20 MB

2020

48

Gen-FS coordinated proficiency test data for genomic foodborne pathogen surveillance, 2017 and 2018 exercises

Timme, Ruth E., Lafon, Patricia C., Balkey, Maria, Adams, Jennifer K., Wagner, Darlene, Carleton, Heather, Strain, Errol, Hoffmann, Maria, Sabol, Ashley, Rand, Hugh, Lindsey, Rebecca, Sheehan, Deborah

Journal:

Scientific Data

Year:

2020

File:

PDF, 860 KB

2020

49

A Multidrug-Resistant Salmonella Infantis Clone Is Spreading and Recombining in the United States

Tyson, Gregory H., Li, Cong, Harrison, Lucas B., Martin, Gordon, Hsu, Chih-Hao, Tate, Heather, Tran, Thu-Thuy, Strain, Errol, Zhao, Shaohua

Journal:

Microbial Drug Resistance

Year:

2020

File:

PDF, 525 KB

2020